HL_7SSL_122

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_122 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.3213

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7SSL|1|3|U|157
7SSL|1|3|G|158
7SSL|1|3|G|159
7SSL|1|3|A|160
7SSL|1|3|A|161
7SSL|1|3|A|162
7SSL|1|3|C|163
7SSL|1|3|G|164

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain Y

30S ribosomal protein S20

Chain p

50S ribosomal protein L19