HL_7SSO_047

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7SSO|1|1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2079

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SSO|1|1|G|1910
7SSO|1|1|U|1911
7SSO|1|1|A|1912
7SSO|1|1|A|1913
7SSO|1|1|C|1914
7SSO|1|1|U|1915
7SSO|1|1|A|1916
7SSO|1|1|U|1917
7SSO|1|1|A|1918
7SSO|1|1|A|1919
7SSO|1|1|C|1920

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA