HL_7SSO_050

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

7SSO|1|1|C|2145, 7SSO|1|1|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_050 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3566

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SSO|1|1|A|2142
7SSO|1|1|C|2143
7SSO|1|1|G|2144
7SSO|1|1|C|2145
7SSO|1|1|C|2146
7SSO|1|1|A|2147
7SSO|1|1|G|2148
7SSO|1|1|U|2149

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

30S ribosomal protein S7

Chain P

30S ribosomal protein S11