HL_7SSO_110

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

7SSO|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_110 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2546

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SSO|1|1|U|1629
7SSO|1|1|A|1630
7SSO|1|1|G|1631
7SSO|1|1|A|1632
7SSO|1|1|G|1633
7SSO|1|1|A|1634
7SSO|1|1|A|1635
7SSO|1|1|U|1636
7SSO|1|1|A|1637

Current chains

Chain 1

23S rRNA

Nearby chains