HL_7SSW_012

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7SSW|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSW_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.2128

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7SSW|1|1|G|410
7SSW|1|1|G|411
7SSW|1|1|A|412
7SSW|1|1|C|413
7SSW|1|1|C|414
7SSW|1|1|A|415
7SSW|1|1|U|416
7SSW|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15