HL_7SSW_111

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

7SSW|1|1|A|781, 7SSW|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSW_111 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1971

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7SSW|1|1|U|779
7SSW|1|1|G|780
7SSW|1|1|A|781
7SSW|1|1|A|782
7SSW|1|1|A|783
7SSW|1|1|G|784
7SSW|1|1|G|785

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2