HL_7ST6_114

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST6_114 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2706

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7ST6|1|1|C|461
7ST6|1|1|C|462
7ST6|1|1|G|463
7ST6|1|1|U|464
7ST6|1|1|G|465
7ST6|1|1|A|466
7ST6|1|1|G|467
7ST6|1|1|G|468

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain d

50S ribosomal protein L4

Chain t

50S ribosomal protein L23