3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
7ST7|1|1|A|1780, 7ST7|1|1|U|1781, 7ST7|1|1|U|1782, 7ST7|1|1|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ST7_044 not in the Motif Atlas
Homologous match to HL_5J7L_178
Geometric discrepancy: 0.1379
The information below is about HL_5J7L_178
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

7ST7|1|1|U|1777
7ST7|1|1|U|1778
7ST7|1|1|U|1779
7ST7|1|1|A|1780
7ST7|1|1|U|1781
7ST7|1|1|U|1782
7ST7|1|1|A|1783
7ST7|1|1|A|1784
7ST7|1|1|A|1785
7ST7|1|1|A|1786
7ST7|1|1|A|1787

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain b
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2742 s