HL_7ST7_047

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7ST7|1|1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1883

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ST7|1|1|G|1910
7ST7|1|1|U|1911
7ST7|1|1|A|1912
7ST7|1|1|A|1913
7ST7|1|1|C|1914
7ST7|1|1|U|1915
7ST7|1|1|A|1916
7ST7|1|1|U|1917
7ST7|1|1|A|1918
7ST7|1|1|A|1919
7ST7|1|1|C|1920

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain h

Viomycin