HL_7ST7_114

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

7ST7|1|6|G|18, 7ST7|1|6|G|19, 7ST7|1|6|U|20, 7ST7|1|6|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ST7_114 not in the Motif Atlas

Homologous match to HL_4WT8_234

Geometric discrepancy: 0.369

The information below is about HL_4WT8_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7ST7|1|6|G|12
7ST7|1|6|C|13
7ST7|1|6|A|14
7ST7|1|6|G|15
7ST7|1|6|C|16
7ST7|1|6|C|17
7ST7|1|6|U|17|||A
7ST7|1|6|G|18
7ST7|1|6|G|19
7ST7|1|6|U|20
7ST7|1|6|A|21
7ST7|1|6|G|22
7ST7|1|6|C|23

Current chains

Chain 6

tRNA fMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA