HL_7SUK_003

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7SUK|1|8|U|232, 7SUK|1|8|C|233

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_003 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.195

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7SUK|1|8|C|230
7SUK|1|8|U|231
7SUK|1|8|U|232
7SUK|1|8|C|233
7SUK|1|8|G|234
7SUK|1|8|G|235

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain SP

U3 small nucleolar RNA-associated protein 20