RNA 3D Hub //

7SUK Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SUK_0071/8/393:404No text annotation
homologous
HL_8C3A_201
NA
HL_7SUK_0081/8/411:422No text annotation
HL_7SUK_0101/8/491:496No text annotation
geometric
HL_7RQB_011
NA
HL_7SUK_0121/8/561:566No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_7SUK_0171/8/1129:1139No text annotation
geometric
HL_3IGI_004
HL_37569.3
HL_7SUK_0201/8/1501:1506GNRA
geometric
HL_6N2V_002
HL_34789.3
HL_7SUK_0221/8/1594:1602Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_7SUK_0231/8/1629:1637No text annotation
HL_7SUK_0291/L0/251:257Mini UNCG with extended bulge
geometric
HL_7A0S_017
HL_90436.3
HL_7SUK_0301/L0/301:305Mini UNCG
geometric
HL_4ZT0_005
NA
HL_7SUK_0381/L0/424:433T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_004
HL_13999.3
HL_7SUK_0321/L0/425:431GNRA
geometric
HL_5FQ5_003
HL_34789.3

Problematic loops

#loop idProblemSequence
HL_7SUK_001No text annotation
HL_7SUK_002No text annotation
HL_7SUK_003No text annotation
HL_7SUK_004Mini UNCG
HL_7SUK_005GNRA related
HL_7SUK_006No text annotation
HL_7SUK_009No text annotation
HL_7SUK_011No text annotation
HL_7SUK_013No text annotation
HL_7SUK_014No text annotation
HL_7SUK_015No text annotation
HL_7SUK_037No text annotation
HL_7SUK_016No text annotation
HL_7SUK_018No text annotation
HL_7SUK_019No text annotation
HL_7SUK_021No text annotation
HL_7SUK_024GNRA
HL_7SUK_025GNRA
HL_7SUK_026No text annotation
HL_7SUK_027UNCG variation
HL_7SUK_028No text annotation
HL_7SUK_031No text annotation
HL_7SUK_033No text annotation
HL_7SUK_039No text annotation
HL_7SUK_034No text annotation
HL_7SUK_035No text annotation
HL_7SUK_036No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SUK_0681/8/318:323,
1/8/345:346		No text annotation
homologous
IL_8P9A_392
IL_01372.1
IL_7SUK_0131/8/514:516,
1/8/536:543		No text annotation
geometric
IL_8VTW_081
NA
IL_7SUK_0151/8/551:552,
1/8/584:587		No text annotation
geometric
IL_5J7L_341
NA
IL_7SUK_0161/8/552:559,
1/8/568:584		No text annotation
IL_7SUK_0721/8/1150:1151,
1/8/1627:1640		No text annotation
IL_7SUK_0261/8/1157:1160,
1/8/1617:1621		C-loop
geometric
IL_4V88_443
NA
IL_7SUK_0271/8/1173:1176,
1/8/1463:1466		Other IL
geometric
IL_5J7L_327
NA
IL_7SUK_0311/8/1495:1498,
1/8/1509:1512		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_7SUK_0731/8/1650:1652,
1/8/1748:1750		Isolated non-canonical cWW pair
homologous
IL_8P9A_456
IL_01003.3
IL_7SUK_0391/L0/16:18,
1/L0/62:65		Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_71625.2
IL_7SUK_0851/L0/94:95,
1/L0/149:156		No text annotation
IL_7SUK_0411/L0/97:99,
1/L0/145:147		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_7SUK_0421/L0/100:104,
1/L0/140:144		No text annotation
IL_7SUK_0431/L0/107:110,
1/L0/136:137		Not an internal loop
geometric
IL_4UYK_002
NA
IL_7SUK_0781/L0/168:171,
1/L0/225:227		No text annotation
IL_7SUK_0791/L0/173:185,
1/L0/212:223		No text annotation
IL_7SUK_0501/L0/245:246,
1/L0/266:268		Single bulged U
geometric
IL_4O26_001
IL_97561.3
IL_7SUK_0511/L0/250:251,
1/L0/257:262		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_7SUK_0521/L0/337:340,
1/L0/386:387		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.2
IL_7SUK_0531/L0/340:341,
1/L0/384:386		Single bulged A
geometric
IL_1JZV_002
IL_14190.2
IL_7SUK_0551/L0/402:407,
1/L0/449:455		No text annotation
IL_7SUK_0561/L0/413:414,
1/L0/441:443		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_7SUK_0571/L0/414:415,
1/L0/439:441		Single bulged U
geometric
IL_4FRG_002
IL_97561.3
IL_7SUK_0581/L0/424:425,
1/L0/431:433		No text annotation
IL_7SUK_0591/L0/466:470,
1/L2/48:50		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_7SUK_0641/L2/78:85,
1/L2/325:329		No text annotation
IL_7SUK_0801/L2/85:96,
1/L2/320:325		No text annotation
IL_7SUK_0661/L2/111:115,
1/L2/252:259		No text annotation

Problematic loops

#loop idProblemSequence
IL_7SUK_001No text annotation
IL_7SUK_002No text annotation
IL_7SUK_003No text annotation
IL_7SUK_004Tandem non-canonical cWW pairs
IL_7SUK_005Double sheared
IL_7SUK_006Tandem non-canonical cWW pairs
IL_7SUK_007No text annotation
IL_7SUK_008Single bulged U
IL_7SUK_009No text annotation
IL_7SUK_010Isolated non-canonical cWW pair
IL_7SUK_011No text annotation
IL_7SUK_012Single bulged A
IL_7SUK_014Tandem non-canonical cWW pairs
IL_7SUK_017Isolated cWS basepair
IL_7SUK_018No text annotation
IL_7SUK_081No text annotation
IL_7SUK_069No text annotation
IL_7SUK_019No text annotation
IL_7SUK_020No text annotation
IL_7SUK_021No text annotation
IL_7SUK_082No text annotation
IL_7SUK_022No text annotation
IL_7SUK_023No text annotation
IL_7SUK_024Tandem non-canonical cWW pairs
IL_7SUK_025Single stack bend
IL_7SUK_070Single bulged G
IL_7SUK_071No text annotation
IL_7SUK_028No text annotation
IL_7SUK_029Single bulged U
IL_7SUK_030No text annotation
IL_7SUK_032Tandem non-canonical cWW pairs
IL_7SUK_083Tandem non-canonical cWW pairs
IL_7SUK_033Tandem non-canonical cWW pairs
IL_7SUK_074No text annotation
IL_7SUK_084Tandem non-canonical cWW pairs
IL_7SUK_034Isolated non-canonical cWW pair
IL_7SUK_035Double sheared
IL_7SUK_036Isolated non-canonical cWW pair
IL_7SUK_037Tandem non-canonical cWW pairs
IL_7SUK_038No text annotation
IL_7SUK_075Isolated non-canonical cWW pair
IL_7SUK_040Tandem non-canonical cWW pairs
IL_7SUK_076Isolated non-canonical cWW pair
IL_7SUK_077No text annotation
IL_7SUK_044No text annotation
IL_7SUK_045No text annotation
IL_7SUK_046No text annotation
IL_7SUK_047No text annotation
IL_7SUK_048Single stack bend
IL_7SUK_049Isolated cWH basepair
IL_7SUK_054Single bulged U
IL_7SUK_060Minor groove platform
IL_7SUK_061No text annotation
IL_7SUK_062Isolated non-canonical cWW pair
IL_7SUK_063Single bulged U
IL_7SUK_065No text annotation
IL_7SUK_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SUK_0011/8/1150:1151,
1/8/1627:1629,
1/8/1637:1640		No text annotation
J3_7SUK_0031/8/1161:1164,
1/8/1581:1587,
1/8/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J5_7SUK_0011/L0/291:299,
1/L0/307:333,
1/L0/391:397,
1/L0/460:462,
1/L2/54:62		No text annotation

Problematic loops

#loop idProblemSequence
J3_7SUK_002No text annotation
J4_7SUK_002No text annotation
J4_7SUK_001No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.0735 s