HL_7SUK_016

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

7SUK|1|8|U|1059, 7SUK|1|8|U|1060, 7SUK|1|8|A|1061, 7SUK|1|8|A|1062, 7SUK|1|8|U|1063

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_016 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2923

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7SUK|1|8|U|1055
7SUK|1|8|U|1056
7SUK|1|8|U|1057
7SUK|1|8|U|1058
7SUK|1|8|U|1059
7SUK|1|8|U|1060
7SUK|1|8|A|1061
7SUK|1|8|A|1062
7SUK|1|8|U|1063
7SUK|1|8|G|1064

Current chains

Chain 8

18S pre-rRNA

Nearby chains