HL_7SUK_020

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_020 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0688

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7SUK|1|8|C|1501
7SUK|1|8|G|1502
7SUK|1|8|A|1503
7SUK|1|8|G|1504
7SUK|1|8|A|1505
7SUK|1|8|G|1506

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1

Chain SN

Ribosome biogenesis protein UTP30

Chain SY

U3 small nucleolar RNA-associated protein 11