HL_7SUK_024

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_024 not in the Motif Atlas

Geometric match to HL_1M5K_003

Geometric discrepancy: 0.2567

The information below is about HL_1M5K_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7SUK|1|8|G|1698
7SUK|1|8|G|1699
7SUK|1|8|C|1700
7SUK|1|8|A|1701
7SUK|1|8|A|1702
7SUK|1|8|C|1703

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain NH

U3 small nucleolar RNA-associated protein 22