HL_7SUK_029

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

7SUK|1|L0|U|253, 7SUK|1|L0|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_029 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.2089

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7SUK|1|L0|C|251
7SUK|1|L0|A|252
7SUK|1|L0|U|253
7SUK|1|L0|C|254
7SUK|1|L0|U|255
7SUK|1|L0|U|256
7SUK|1|L0|G|257

Current chains

Chain L0

5' ETS

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1

Chain SN

Ribosome biogenesis protein UTP30

Chain SV

Regulator of rDNA transcription protein 14