HL_7SUK_038

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUGAAACACC

Length

10 nucleotides

Bulged bases

7SUK|1|L0|C|430, 7SUK|1|L0|C|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_038 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.3499

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7SUK|1|L0|G|424
7SUK|1|L0|U|425
7SUK|1|L0|G|426
7SUK|1|L0|A|427
7SUK|1|L0|A|428
7SUK|1|L0|A|429
7SUK|1|L0|C|430
7SUK|1|L0|A|431
7SUK|1|L0|C|432
7SUK|1|L0|C|433

Current chains

Chain L0

5' ETS

Nearby chains

Chain SD

rRNA 2'-O-methyltransferase fibrillarin

Chain SQ

rRNA-processing protein FCF2

Chain SY

U3 small nucleolar RNA-associated protein 11