HL_7SYG_021

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7SYG|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYG_021 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.2627

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYG|1|2|G|1054
7SYG|1|2|A|1055
7SYG|1|2|U|1056
7SYG|1|2|C|1057
7SYG|1|2|A|1058
7SYG|1|2|G|1059
7SYG|1|2|A|1060
7SYG|1|2|U|1061
7SYG|1|2|A|1062
7SYG|1|2|C|1063
7SYG|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11