HL_7SYG_030

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYG_030 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2283

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7SYG|1|2|C|1460
7SYG|1|2|G|1461
7SYG|1|2|U|1462
7SYG|1|2|U|1463
7SYG|1|2|C|1464
7SYG|1|2|A|1465
7SYG|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1