HL_7SYG_032

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7SYG|1|2|U|1621, 7SYG|1|2|U|1622, 7SYG|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYG_032 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.4926

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYG|1|2|A|1614
7SYG|1|2|U|1615
7SYG|1|2|U|1616
7SYG|1|2|G|1617
7SYG|1|2|C|1618
7SYG|1|2|A|1619
7SYG|1|2|A|1620
7SYG|1|2|U|1621
7SYG|1|2|U|1622
7SYG|1|2|A|1623
7SYG|1|2|U|1624
7SYG|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain e

eS29