HL_7SYH_007

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYH|1|2|C|381, 7SYH|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_007 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.2318

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYH|1|2|G|377
7SYH|1|2|U|378
7SYH|1|2|C|379
7SYH|1|2|G|380
7SYH|1|2|C|381
7SYH|1|2|C|382
7SYH|1|2|G|383
7SYH|1|2|U|384
7SYH|1|2|G|385
7SYH|1|2|C|386
7SYH|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17