RNA 3D Hub //

7SYH Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYH_0011/2/7:17No text annotation
geometric
HL_6CZR_072
NA
HL_7SYH_0021/2/69:80No text annotation
geometric
HL_361D_002
NA
HL_7SYH_0031/2/155:163No text annotation
HL_7SYH_0051/2/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7SYH_0071/2/377:387No text annotation
HL_7SYH_0081/2/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7SYH_0091/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7SYH_0101/2/462:467UNCG
geometric
HL_4LFB_009
HL_61337.1
HL_7SYH_0111/2/498:504No text annotation
geometric
HL_7A0S_011
HL_75660.6
HL_7SYH_0131/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7SYH_0141/2/618:623No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_7SYH_0161/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7SYH_0201/2/994:999GNRA
geometric
HL_4LFB_016
HL_34789.1
HL_7SYH_0231/2/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7SYH_0241/2/1178:1183GNRA
geometric
HL_6N2V_002
HL_34789.1
HL_7SYH_0251/2/1245:1254No text annotation
geometric
HL_5J7L_143
NA
HL_7SYH_0271/2/1353:1358GNRA
geometric
HL_4V9F_065
HL_34789.1
HL_7SYH_0281/2/1366:1373No text annotation
geometric
HL_4V88_215
NA
HL_7SYH_0321/2/1614:1625No text annotation
homologous
HL_8C3A_224
NA
HL_7SYH_0331/2/1658:1666No text annotation
geometric
HL_4V88_220
NA
HL_7SYH_0351/2/1846:1853Externally structured
geometric
HL_8C3A_022
NA

Problematic loops

#loop idProblemSequence
HL_7SYH_004No text annotation
HL_7SYH_006No text annotation
HL_7SYH_012No text annotation
HL_7SYH_015No text annotation
HL_7SYH_017No text annotation
HL_7SYH_018No text annotation
HL_7SYH_019No text annotation
HL_7SYH_021No text annotation
HL_7SYH_022No text annotation
HL_7SYH_026Anticodon loop related
HL_7SYH_029No text annotation
HL_7SYH_030UNCG variation
HL_7SYH_031No text annotation
HL_7SYH_034Externally structured
HL_7SYH_036No text annotation
HL_7SYH_037No text annotation
HL_7SYH_038No text annotation
HL_7SYH_039No text annotation
HL_7SYH_040No text annotation
HL_7SYH_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYH_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
NA
IL_7SYH_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
NA
IL_7SYH_0031/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7SYH_0041/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7SYH_0051/2/56:62,
1/2/86:89		Other IL
geometric
IL_5TBW_043
NA
IL_7SYH_0061/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7SYH_0071/2/108:112,
1/2/349:353		No text annotation
geometric
IL_5TBW_121
NA
IL_7SYH_0891/2/108:115,
1/2/348:353		No text annotation
IL_7SYH_0081/2/112:115,
1/2/348:349		Multiple bulged bases
geometric
IL_5WLH_001
NA
IL_7SYH_0091/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7SYH_0111/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7SYH_0121/2/152:155,
1/2/163:166		No text annotation
homologous
IL_8C3A_403
NA
IL_7SYH_0151/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7SYH_0901/2/315:319,
1/2/332:335		No text annotation
IL_7SYH_0161/2/317:319,
1/2/332:333		Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
NA
IL_7SYH_0181/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
NA
IL_7SYH_0911/2/366:373,
1/2/391:394		No text annotation
IL_7SYH_0201/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7SYH_0211/2/437:439,
1/2/454:457		No text annotation
IL_7SYH_0221/2/459:461,
1/2/468:470		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.4
IL_7SYH_0231/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_7RQB_080
NA
IL_7SYH_0241/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_7SYH_0251/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7SYH_0281/2/563:566,
1/2/584:592		No text annotation
geometric
IL_3NPQ_006
IL_93503.1
IL_7SYH_0921/2/563:569,
1/2/581:592		No text annotation
IL_7SYH_0291/2/566:569,
1/2/581:584		Tandem non-canonical cWW pairs
geometric
IL_402D_001
NA
IL_7SYH_1041/2/599:608,
1/2/635:637		No text annotation
IL_7SYH_0311/2/611:617,
1/2/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7SYH_0321/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
NA
IL_7SYH_0331/2/665:671,
1/2/1161:1162		Multiple bulged bases
geometric
IL_1R3E_001
IL_44609.1
IL_7SYH_0341/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
NA
IL_7SYH_0351/2/676:682,
1/2/1023:1029		No text annotation
IL_7SYH_1051/2/802:804,
1/2/859:863		8-nt loop receptor
geometric
IL_6DME_002
IL_44025.1
IL_7SYH_0401/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
NA
IL_7SYH_0411/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7SYH_1061/2/925:926,
1/2/1015:1017		Single bulged U
geometric
IL_7KVT_002
IL_97561.1
IL_7SYH_0451/2/927:931,
1/2/1010:1014		No text annotation
geometric
IL_5TBW_121
NA
IL_7SYH_0951/2/927:935,
1/2/1007:1014		No text annotation
IL_7SYH_0461/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7SYH_1071/2/1041:1047,
1/2/1071:1074		No text annotation
IL_7SYH_0501/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_6CZR_145
NA
IL_7SYH_0511/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7SYH_0521/2/1098:1103,
1/2/1129:1134		No text annotation
geometric
IL_5TBW_476
NA
IL_7SYH_0971/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4LFB_004
IL_34520.1
IL_7SYH_0541/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_84044.1
IL_7SYH_1081/2/1214:1217,
1/2/1681:1685		C-loop
homologous
IL_8CRE_445
IL_63596.12
IL_7SYH_0621/2/1337:1338,
1/2/1488:1490		Single bulged A
geometric
IL_4WF9_006
IL_14190.1
IL_7SYH_1001/2/1337:1340,
1/2/1487:1490		No text annotation
geometric
IL_4N0T_004
IL_32983.1
IL_7SYH_0631/2/1338:1340,
1/2/1487:1488		Single stack bend
geometric
IL_5J7L_032
NA
IL_7SYH_0641/2/1347:1349,
1/2/1380:1382		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7SYH_0651/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_6DLR_003
IL_34520.1
IL_7SYH_1021/2/1541:1550,
1/2/1582:1592		No text annotation
IL_7SYH_1111/2/1560:1563,
1/2/1572:1575		Tandem non-canonical cWW pairs
homologous
IL_8P9A_450
IL_71194.1
IL_7SYH_0731/2/1702:1705,
1/2/1829:1833		No text annotation
geometric
IL_4V88_464
NA
IL_7SYH_0801/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_4V88_471
NA
IL_7SYH_0811/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_5MWI_004
NA
IL_7SYH_0821/2/1742:1746,
1/2/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA

Problematic loops

#loop idProblemSequence
IL_7SYH_010No text annotation
IL_7SYH_013Double sheared with near cWW
IL_7SYH_014No text annotation
IL_7SYH_017Single stack bend
IL_7SYH_019No text annotation
IL_7SYH_026No text annotation
IL_7SYH_027No text annotation
IL_7SYH_030No text annotation
IL_7SYH_036No text annotation
IL_7SYH_037Minor groove platform
IL_7SYH_038No text annotation
IL_7SYH_039No text annotation
IL_7SYH_042Isolated non-canonical cWW pair
IL_7SYH_043Tandem non-canonical cWW pairs
IL_7SYH_093Isolated non-canonical cWW pair
IL_7SYH_094Isolated non-canonical cWW pair
IL_7SYH_044Tandem non-canonical cWW pairs
IL_7SYH_047Tandem non-canonical cWW pairs
IL_7SYH_096Kink-turn
IL_7SYH_048Kink-turn
IL_7SYH_049No text annotation
IL_7SYH_053No text annotation
IL_7SYH_055No text annotation
IL_7SYH_056Isolated non-canonical cWW pair
IL_7SYH_057Minor groove platform
IL_7SYH_058No text annotation
IL_7SYH_059No text annotation
IL_7SYH_098No text annotation
IL_7SYH_109No text annotation
IL_7SYH_110No text annotation
IL_7SYH_099No text annotation
IL_7SYH_060Single bulged U
IL_7SYH_061No text annotation
IL_7SYH_066No text annotation
IL_7SYH_101No text annotation
IL_7SYH_067No text annotation
IL_7SYH_068Single bulged G
IL_7SYH_069Isolated non-canonical cWW pair
IL_7SYH_070180 degree turn
IL_7SYH_071Tandem non-canonical cWW pairs
IL_7SYH_103Double sheared with non-canonical cWW
IL_7SYH_072No text annotation
IL_7SYH_074Isolated non-canonical cWW pair
IL_7SYH_075No text annotation
IL_7SYH_076Isolated non-canonical cWW pair
IL_7SYH_077Double sheared
IL_7SYH_078Single bulged U
IL_7SYH_079Isolated non-canonical cWW pair
IL_7SYH_083No text annotation
IL_7SYH_084No text annotation
IL_7SYH_085Single stack bend
IL_7SYH_112No text annotation
IL_7SYH_086No text annotation
IL_7SYH_087No text annotation
IL_7SYH_088No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYH_0131/2/37:41,
1/2/481:487,
1/2/512:518		No text annotation
J3_7SYH_0011/2/682:684,
1/2/918:923,
1/2/1019:1023		No text annotation
homologous
J3_8C3A_034
NA
J3_7SYH_0031/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7SYH_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7SYH_0051/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7SYH_0091/2/1340:1347,
1/2/1382:1389,
1/2/1481:1487		No text annotation
J3_7SYH_0101/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
geometric
J3_8C3A_085
NA
J3_7SYH_0151/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J4_7SYH_0041/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8CRE_022
J4_14595.1
J5_7SYH_0041/2/30:34,
1/2/521:530,
1/2/554:563,
1/2/592:596,
1/2/640:644		No text annotation
J5_7SYH_0051/2/30:34,
1/2/521:530,
1/2/554:569,
1/2/581:596,
1/2/640:644		No text annotation
J5_7SYH_0061/2/123:129,
1/2/183:185,
1/2/214:219,
1/2/302:312,
1/2/337:341		No text annotation
J7_7SYH_0011/2/53:62,
1/2/86:106,
1/2/355:357,
1/2/405:409,
1/2/431:437,
1/2/457:461,
1/2/468:474		No text annotation

Problematic loops

#loop idProblemSequence
J3_7SYH_002No text annotation
J3_7SYH_006No text annotation
J3_7SYH_017No text annotation
J3_7SYH_007No text annotation
J3_7SYH_008No text annotation
J3_7SYH_014No text annotation
J3_7SYH_011No text annotation
J3_7SYH_012No text annotation
J3_7SYH_016No text annotation
J4_7SYH_001No text annotation
J4_7SYH_002No text annotation
J4_7SYH_005No text annotation
J4_7SYH_003No text annotation
J5_7SYH_001No text annotation
J5_7SYH_002No text annotation
J5_7SYH_003No text annotation

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