HL_7SYH_012

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUCUUUCGAG

Length

10 nucleotides

Bulged bases

7SYH|1|2|U|541, 7SYH|1|2|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|537
7SYH|1|2|U|538
7SYH|1|2|C|539
7SYH|1|2|U|540
7SYH|1|2|U|541
7SYH|1|2|U|542
7SYH|1|2|C|543
7SYH|1|2|G|544
7SYH|1|2|A|545
7SYH|1|2|G|546

Current chains

Chain 2

18S rRNA

Nearby chains