HL_7SYH_025

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7SYH|1|2|U|1248, 7SYH|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_025 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1214

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SYH|1|2|G|1245
7SYH|1|2|A|1246
7SYH|1|2|C|1247
7SYH|1|2|U|1248
7SYH|1|2|C|1249
7SYH|1|2|A|1250
7SYH|1|2|A|1251
7SYH|1|2|C|1252
7SYH|1|2|A|1253
7SYH|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain e

eS29