HL_7SYI_012

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGACUCUUUCGAGGCCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|534
7SYI|1|2|G|535
7SYI|1|2|A|536
7SYI|1|2|C|537
7SYI|1|2|U|538
7SYI|1|2|C|539
7SYI|1|2|U|540
7SYI|1|2|U|541
7SYI|1|2|U|542
7SYI|1|2|C|543
7SYI|1|2|G|544
7SYI|1|2|A|545
7SYI|1|2|G|546
7SYI|1|2|G|547
7SYI|1|2|C|548
7SYI|1|2|C|549
7SYI|1|2|C|550

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30