RNA 3D Hub //

7SYI Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYI_0011/2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7SYI_0021/2/69:80No text annotation
geometric
HL_361D_002
HL_13963.3
HL_7SYI_0031/2/156:162No text annotation
geometric
HL_7A0S_011
HL_75660.5
HL_7SYI_0041/2/196:203Externally structured
geometric
HL_8C3A_022
NA
HL_7SYI_0051/2/288:295No text annotation
geometric
HL_5TBW_006
NA
HL_7SYI_0071/2/377:387tRNA D-loop
geometric
HL_4V90_032
HL_20811.4
HL_7SYI_0081/2/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7SYI_0091/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7SYI_0101/2/462:467UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_7SYI_0111/2/498:504No text annotation
geometric
HL_7A0S_011
HL_75660.5
HL_7SYI_0121/2/534:550No text annotation
HL_7SYI_0131/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7SYI_0141/2/618:623No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_7SYI_0161/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7SYI_0181/2/884:902No text annotation
HL_7SYI_0191/2/957:966No text annotation
geometric
HL_4LFB_015
HL_75293.5
HL_7SYI_0201/2/994:999GNRA
geometric
HL_1G1X_005
HL_37824.8
HL_7SYI_0211/2/1054:1064No text annotation
geometric
HL_4V88_208
NA
HL_7SYI_0221/2/1113:1120No text annotation
HL_7SYI_0231/2/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7SYI_0241/2/1178:1183GNRA
geometric
HL_1Q96_001
HL_37824.8
HL_7SYI_0251/2/1245:1254No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7SYI_0441/2/1295:1304Anticodon loop related
homologous
HL_8C3A_218
NA
HL_7SYI_0271/2/1353:1358GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_7SYI_0281/2/1366:1373No text annotation
geometric
HL_4V88_215
NA
HL_7SYI_0301/2/1460:1466GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_7SYI_0311/2/1565:1570GNRA
geometric
HL_4V9F_017
HL_37824.8
HL_7SYI_0321/2/1614:1625No text annotation
homologous
HL_8C3A_224
NA
HL_7SYI_0331/2/1658:1666No text annotation
geometric
HL_4V88_220
NA
HL_7SYI_0351/2/1846:1853Externally structured
geometric
HL_8C3A_022
NA
HL_7SYI_0361/z/161:166No text annotation
HL_7SYI_0381/z/232:235No text annotation
HL_7SYI_0461/z/262:271No text annotation
HL_7SYI_0401/z/280:283No text annotation
HL_7SYI_0481/z/294:299No text annotation
HL_7SYI_0421/z/304:313No text annotation

Problematic loops

#loop idProblemSequence
HL_7SYI_006No text annotation
HL_7SYI_015No text annotation
HL_7SYI_017No text annotation
HL_7SYI_043No text annotation
HL_7SYI_026No text annotation
HL_7SYI_045tRNA anticodon loop
HL_7SYI_029No text annotation
HL_7SYI_034Mini UNCG
HL_7SYI_037No text annotation
HL_7SYI_039No text annotation
HL_7SYI_047No text annotation
HL_7SYI_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYI_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_7SYI_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
geometric
IL_5C5W_002
IL_87907.2
IL_7SYI_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_7SYI_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7SYI_0051/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7SYI_0061/2/56:62,
1/2/86:89		No text annotation
IL_7SYI_0071/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7SYI_0081/2/108:112,
1/2/349:353		No text annotation
geometric
IL_5TBW_121
NA
IL_7SYI_0091/2/112:115,
1/2/348:349		Multiple bulged bases
geometric
IL_5XWP_001
IL_82107.5
IL_7SYI_0101/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7SYI_0121/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7SYI_0131/2/152:155,
1/2/163:166		No text annotation
geometric
IL_6AZ4_001
NA
IL_7SYI_0141/2/188:192,
1/2/207:211		Double sheared with near cWW
geometric
IL_7A0S_056
IL_17948.2
IL_7SYI_0151/2/216:219,
1/2/302:309		No text annotation
IL_7SYI_0171/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7SYI_0181/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_7SYI_0191/2/320:322,
1/2/330:331		Single stack bend
geometric
IL_5TBW_375
NA
IL_7SYI_0201/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
IL_46174.3
IL_7SYI_0211/2/366:373,
1/2/391:394		No text annotation
IL_7SYI_0221/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7SYI_1031/2/437:439,
1/2/454:456		Isolated cWH basepair
homologous
IL_8CRE_411
IL_10167.6
IL_7SYI_0241/2/459:461,
1/2/468:470		Isolated near basepair
geometric
IL_3NJ7_003
IL_42997.3
IL_7SYI_0251/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_7SYI_0261/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7SYI_0271/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7SYI_0281/2/529:531,
1/2/553:556		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_7SYI_0291/2/563:565,
1/2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7SYI_0301/2/565:569,
1/2/581:585		No text annotation
geometric
IL_4V88_422
NA
IL_7SYI_1041/2/599:608,
1/2/635:637		No text annotation
IL_7SYI_0321/2/611:617,
1/2/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7SYI_0331/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7SYI_0341/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_6CZR_134
NA
IL_7SYI_0351/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_7SYI_0361/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7SYI_0381/2/750:754,
1/2/790:793		No text annotation
IL_7SYI_0391/2/802:803,
1/2/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_4PDB_002
IL_68140.4
IL_7SYI_0401/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_7SYI_0411/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7SYI_0421/2/874:876,
1/2/910:912		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_87907.2
IL_7SYI_0911/2/877:879,
1/2/907:909		Isolated non-canonical cWW pair
geometric
IL_4LFB_059
IL_87907.2
IL_7SYI_0441/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_7SYI_1051/2/925:927,
1/2/1014:1017		Isolated cWH basepair
homologous
IL_8CRE_432
IL_10167.6
IL_7SYI_0461/2/927:929,
1/2/1013:1014		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7SYI_0921/2/927:931,
1/2/1010:1014		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_49751.4
IL_7SYI_0471/2/929:931,
1/2/1010:1013		No text annotation
geometric
IL_4P3T_002
NA
IL_7SYI_0481/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7SYI_0491/2/942:945,
1/2/981:984		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_7SYI_1061/2/952:956,
1/2/967:974		Kink-turn
geometric
IL_6UFM_001
IL_01488.3
IL_7SYI_0511/2/1041:1047,
1/2/1071:1074		No text annotation
IL_7SYI_0521/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_6CZR_145
NA
IL_7SYI_0531/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7SYI_0541/2/1098:1103,
1/2/1129:1134		No text annotation
geometric
IL_6O5F_001
NA
IL_7SYI_0931/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4V88_388
NA
IL_7SYI_0561/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_41756.4
IL_7SYI_0941/2/1214:1217,
1/2/1681:1685		C-loop
homologous
IL_8C3A_449
NA
IL_7SYI_0581/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
geometric
IL_5MWI_004
IL_87907.2
IL_7SYI_0591/2/1235:1236,
1/2/1521:1523		Minor groove platform
geometric
IL_7A0S_028
IL_51454.3
IL_7SYI_0951/2/1267:1273,
1/2/1510:1515		No text annotation
IL_7SYI_0601/2/1269:1273,
1/2/1510:1513		No text annotation
IL_7SYI_0961/2/1282:1294,
1/2/1305:1315		No text annotation
IL_7SYI_0611/2/1325:1327,
1/2/1502:1503		Single bulged U
geometric
IL_4V88_449
NA
IL_7SYI_0971/2/1329:1335,
1/2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_7SYI_0631/2/1337:1338,
1/2/1488:1490		Single bulged A
geometric
IL_4V88_452
NA
IL_7SYI_0981/2/1337:1340,
1/2/1487:1490		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7SYI_0641/2/1338:1340,
1/2/1487:1488		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_7SYI_0651/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
geometric
IL_4V88_453
NA
IL_7SYI_0661/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_5ML7_009
IL_51454.3
IL_7SYI_0671/2/1395:1399,
1/2/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_7SYI_0991/2/1395:1401,
1/2/1445:1450		No text annotation
IL_7SYI_0681/2/1402:1406,
1/2/1440:1444		No text annotation
homologous
IL_8CRE_459
NA
IL_7SYI_0691/2/1412:1413,
1/2/1427:1429		No text annotation
IL_7SYI_0701/2/1537:1539,
1/2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_4J39_001
IL_87907.2
IL_7SYI_1001/2/1541:1550,
1/2/1582:1592		No text annotation
IL_7SYI_0711/2/1550:1558,
1/2/1577:1582		No text annotation
IL_7SYI_0721/2/1559:1562,
1/2/1573:1576		Tandem non-canonical cWW pairs
geometric
IL_402D_001
IL_77658.1
IL_7SYI_1011/2/1560:1563,
1/2/1572:1575		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_7SYI_0731/2/1604:1610,
1/2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7SYI_0741/2/1702:1706,
1/2/1828:1833		No text annotation
IL_7SYI_0751/2/1706:1708,
1/2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_7SYI_1071/2/1708:1711,
1/2/1822:1826		No text annotation
IL_7SYI_0771/2/1713:1720,
1/2/1813:1820		No text annotation
IL_7SYI_0781/2/1720:1722,
1/2/1812:1813		Single bulged U
homologous
IL_8P9A_458
IL_89505.4
IL_7SYI_0791/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_7SYI_0801/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_3D0U_002
IL_09705.15
IL_7SYI_0811/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_7SYI_0821/2/1742:1746,
1/2/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA
IL_7SYI_0831/2/1750:1751,
1/2/1782:1784		No text annotation
IL_7SYI_0841/2/1751:1753,
1/2/1780:1782		No text annotation
IL_7SYI_0851/2/1753:1754,
1/2/1778:1780		No text annotation
IL_7SYI_0861/z/135:138,
1/z/286:289		No text annotation
IL_7SYI_0871/z/149:150,
1/z/242:244		No text annotation
IL_7SYI_0881/z/255:261,
1/z/272:277		No text annotation

Problematic loops

#loop idProblemSequence
IL_7SYI_089Isolated non-canonical cWW pair
IL_7SYI_011No text annotation
IL_7SYI_016No text annotation
IL_7SYI_023Tandem non-canonical cWW pairs
IL_7SYI_031No text annotation
IL_7SYI_037No text annotation
IL_7SYI_090No text annotation
IL_7SYI_043Tandem non-canonical cWW pairs
IL_7SYI_045Tandem non-canonical cWW pairs
IL_7SYI_050Kink-turn
IL_7SYI_055Minor groove platform with extra cWW
IL_7SYI_057No text annotation
IL_7SYI_062No text annotation
IL_7SYI_076No text annotation
IL_7SYI_102Double sheared with non-canonical cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYI_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_068
J3_67856.4
J3_7SYI_0021/2/682:684,
1/2/918:922,
1/2/1022:1023		No text annotation
geometric
J3_4V88_080
NA
J3_7SYI_0141/2/682:684,
1/2/918:923,
1/2/1019:1023		No text annotation
J3_7SYI_0031/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_8C3A_035
NA
J3_7SYI_0041/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7SYI_0051/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7SYI_0151/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_8P9A_076
J3_25303.4
J3_7SYI_0071/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7SYI_0081/2/1237:1244,
1/2/1255:1266,
1/2/1516:1520		No text annotation
geometric
J3_8C3A_040
NA
J3_7SYI_0091/2/1273:1277,
1/2/1320:1324,
1/2/1504:1510		No text annotation
homologous
J3_8C3A_041
NA
J3_7SYI_0101/2/1340:1345,
1/2/1384:1389,
1/2/1481:1487		No text annotation
J3_7SYI_0111/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_7SYI_0121/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J3_7SYI_0131/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7SYI_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_7SYI_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J4_7SYI_0061/z/133:137,
1/z/287:291,
1/z/302:303,
1/z/314:315		No text annotation
J4_7SYI_0041/z/139:141,
1/z/252:253,
1/z/279:280,
1/z/283:285		No text annotation
J4_7SYI_0051/z/153:156,
1/z/171:172,
1/z/227:229,
1/z/238:239		No text annotation
J5_7SYI_0011/2/30:34,
1/2/521:528,
1/2/557:563,
1/2/592:595,
1/2/641:644		No text annotation
J5_7SYI_0021/2/30:34,
1/2/521:528,
1/2/557:565,
1/2/585:595,
1/2/641:644		No text annotation
J5_7SYI_0031/2/53:62,
1/2/86:96,
1/2/434:436,
1/2/457:461,
1/2/468:474		No text annotation
J5_7SYI_0041/2/123:129,
1/2/183:185,
1/2/214:219,
1/2/302:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_7SYI_006No text annotation
J3_7SYI_016No text annotation
J3_7SYI_017No text annotation
J4_7SYI_003No text annotation

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