7SYI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7SYI_001 | 1/2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
HL_7SYI_002 | 1/2/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
HL_7SYI_003 | 1/2/156:162 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
HL_7SYI_004 | 1/2/196:203 | Externally structured | geometric HL_8C3A_022 NA | |
HL_7SYI_005 | 1/2/288:295 | No text annotation | geometric HL_5TBW_006 NA | |
HL_7SYI_007 | 1/2/377:387 | tRNA D-loop | geometric HL_4V90_032 HL_20811.4 | |
HL_7SYI_008 | 1/2/416:421 | No text annotation | geometric HL_4V88_194 NA | |
HL_7SYI_009 | 1/2/441:452 | No text annotation | geometric HL_4V88_195 NA | |
HL_7SYI_010 | 1/2/462:467 | UNCG | geometric HL_4LFB_009 HL_34617.5 | |
HL_7SYI_011 | 1/2/498:504 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
HL_7SYI_012 | 1/2/534:550 | No text annotation | ||
HL_7SYI_013 | 1/2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
HL_7SYI_014 | 1/2/618:623 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_7SYI_016 | 1/2/820:828 | No text annotation | geometric HL_4V88_203 NA | |
HL_7SYI_018 | 1/2/884:902 | No text annotation | ||
HL_7SYI_019 | 1/2/957:966 | No text annotation | geometric HL_4LFB_015 HL_75293.5 | |
HL_7SYI_020 | 1/2/994:999 | GNRA | geometric HL_1G1X_005 HL_37824.8 | |
HL_7SYI_021 | 1/2/1054:1064 | No text annotation | geometric HL_4V88_208 NA | |
HL_7SYI_022 | 1/2/1113:1120 | No text annotation | ||
HL_7SYI_023 | 1/2/1141:1146 | GNRA | geometric HL_4V88_210 NA | |
HL_7SYI_024 | 1/2/1178:1183 | GNRA | geometric HL_1Q96_001 HL_37824.8 | |
HL_7SYI_025 | 1/2/1245:1254 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
HL_7SYI_044 | 1/2/1295:1304 | Anticodon loop related | homologous HL_8C3A_218 NA | |
HL_7SYI_027 | 1/2/1353:1358 | GNRA | geometric HL_5J7L_027 HL_37824.8 | |
HL_7SYI_028 | 1/2/1366:1373 | No text annotation | geometric HL_4V88_215 NA | |
HL_7SYI_030 | 1/2/1460:1466 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
HL_7SYI_031 | 1/2/1565:1570 | GNRA | geometric HL_4V9F_017 HL_37824.8 | |
HL_7SYI_032 | 1/2/1614:1625 | No text annotation | homologous HL_8C3A_224 NA | |
HL_7SYI_033 | 1/2/1658:1666 | No text annotation | geometric HL_4V88_220 NA | |
HL_7SYI_035 | 1/2/1846:1853 | Externally structured | geometric HL_8C3A_022 NA | |
HL_7SYI_036 | 1/z/161:166 | No text annotation | ||
HL_7SYI_038 | 1/z/232:235 | No text annotation | ||
HL_7SYI_046 | 1/z/262:271 | No text annotation | ||
HL_7SYI_040 | 1/z/280:283 | No text annotation | ||
HL_7SYI_048 | 1/z/294:299 | No text annotation | ||
HL_7SYI_042 | 1/z/304:313 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7SYI_006 | No text annotation | ||
HL_7SYI_015 | No text annotation | ||
HL_7SYI_017 | No text annotation | ||
HL_7SYI_043 | No text annotation | ||
HL_7SYI_026 | No text annotation | ||
HL_7SYI_045 | tRNA anticodon loop | ||
HL_7SYI_029 | No text annotation | ||
HL_7SYI_034 | Mini UNCG | ||
HL_7SYI_037 | No text annotation | ||
HL_7SYI_039 | No text annotation | ||
HL_7SYI_047 | No text annotation | ||
HL_7SYI_041 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7SYI_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
IL_7SYI_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 IL_87907.2 | |
IL_7SYI_003 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
IL_7SYI_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
IL_7SYI_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | geometric IL_4V88_388 NA | |
IL_7SYI_006 | 1/2/56:62, 1/2/86:89 | No text annotation | ||
IL_7SYI_007 | 1/2/63:68, 1/2/81:85 | No text annotation | geometric IL_4V88_390 NA | |
IL_7SYI_008 | 1/2/108:112, 1/2/349:353 | No text annotation | geometric IL_5TBW_121 NA | |
IL_7SYI_009 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | geometric IL_5XWP_001 IL_82107.5 | |
IL_7SYI_010 | 1/2/116:121, 1/2/343:347 | No text annotation | geometric IL_4V88_393 NA | |
IL_7SYI_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
IL_7SYI_013 | 1/2/152:155, 1/2/163:166 | No text annotation | geometric IL_6AZ4_001 NA | |
IL_7SYI_014 | 1/2/188:192, 1/2/207:211 | Triple sheared | geometric IL_7A0S_056 IL_17948.2 | |
IL_7SYI_015 | 1/2/216:219, 1/2/302:309 | No text annotation | ||
IL_7SYI_017 | 1/2/312:314, 1/2/336:337 | Single bulged A | geometric IL_4V88_399 NA | |
IL_7SYI_018 | 1/2/317:319, 1/2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
IL_7SYI_019 | 1/2/320:322, 1/2/330:331 | Single stack bend | geometric IL_5TBW_375 NA | |
IL_7SYI_020 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 IL_46174.3 | |
IL_7SYI_021 | 1/2/366:373, 1/2/391:394 | No text annotation | ||
IL_7SYI_022 | 1/2/411:413, 1/2/424:429 | No text annotation | geometric IL_4V88_404 NA | |
IL_7SYI_103 | 1/2/437:439, 1/2/454:456 | No text annotation | homologous IL_8CRE_411 IL_10167.6 | |
IL_7SYI_024 | 1/2/459:461, 1/2/468:470 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.3 | |
IL_7SYI_025 | 1/2/487:489, 1/2/511:512 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
IL_7SYI_026 | 1/2/491:495, 1/2/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_7SYI_027 | 1/2/495:496, 1/2/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
IL_7SYI_028 | 1/2/529:531, 1/2/553:556 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
IL_7SYI_029 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
IL_7SYI_030 | 1/2/565:569, 1/2/581:585 | No text annotation | geometric IL_4V88_422 NA | |
IL_7SYI_104 | 1/2/599:608, 1/2/635:637 | No text annotation | ||
IL_7SYI_032 | 1/2/611:617, 1/2/624:632 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_7SYI_033 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
IL_7SYI_034 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_6CZR_134 NA | |
IL_7SYI_035 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
IL_7SYI_036 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
IL_7SYI_038 | 1/2/750:754, 1/2/790:793 | No text annotation | ||
IL_7SYI_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_4PDB_002 IL_68140.4 | |
IL_7SYI_040 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
IL_7SYI_041 | 1/2/807:815, 1/2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
IL_7SYI_042 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
IL_7SYI_091 | 1/2/877:879, 1/2/907:909 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_87907.2 | |
IL_7SYI_044 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
IL_7SYI_105 | 1/2/925:927, 1/2/1014:1017 | No text annotation | homologous IL_8CRE_432 IL_10167.6 | |
IL_7SYI_046 | 1/2/927:929, 1/2/1013:1014 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
IL_7SYI_092 | 1/2/927:931, 1/2/1010:1014 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
IL_7SYI_047 | 1/2/929:931, 1/2/1010:1013 | No text annotation | geometric IL_4P3T_002 NA | |
IL_7SYI_048 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
IL_7SYI_049 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
IL_7SYI_106 | 1/2/952:956, 1/2/967:974 | Kink-turn | geometric IL_6UFM_001 IL_01488.3 | |
IL_7SYI_051 | 1/2/1041:1047, 1/2/1071:1074 | No text annotation | ||
IL_7SYI_052 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | geometric IL_6CZR_145 NA | |
IL_7SYI_053 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
IL_7SYI_054 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation | geometric IL_6O5F_001 NA | |
IL_7SYI_093 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_4V88_388 NA | |
IL_7SYI_056 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_41756.4 | |
IL_7SYI_094 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_8C3A_449 NA | |
IL_7SYI_058 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 IL_87907.2 | |
IL_7SYI_059 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
IL_7SYI_095 | 1/2/1267:1273, 1/2/1510:1515 | No text annotation | ||
IL_7SYI_060 | 1/2/1269:1273, 1/2/1510:1513 | No text annotation | ||
IL_7SYI_096 | 1/2/1282:1294, 1/2/1305:1315 | No text annotation | ||
IL_7SYI_061 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | geometric IL_4V88_449 NA | |
IL_7SYI_097 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
IL_7SYI_063 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | geometric IL_4V88_452 NA | |
IL_7SYI_098 | 1/2/1337:1340, 1/2/1487:1490 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
IL_7SYI_064 | 1/2/1338:1340, 1/2/1487:1488 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
IL_7SYI_065 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | geometric IL_4V88_453 NA | |
IL_7SYI_066 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
IL_7SYI_067 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
IL_7SYI_099 | 1/2/1395:1401, 1/2/1445:1450 | No text annotation | ||
IL_7SYI_068 | 1/2/1402:1406, 1/2/1440:1444 | No text annotation | homologous IL_8CRE_459 NA | |
IL_7SYI_069 | 1/2/1412:1413, 1/2/1427:1429 | No text annotation | ||
IL_7SYI_070 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_87907.2 | |
IL_7SYI_100 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
IL_7SYI_071 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation | ||
IL_7SYI_072 | 1/2/1559:1562, 1/2/1573:1576 | Tandem non-canonical cWW pairs | geometric IL_402D_001 IL_77658.1 | |
IL_7SYI_101 | 1/2/1560:1563, 1/2/1572:1575 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
IL_7SYI_073 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
IL_7SYI_074 | 1/2/1702:1706, 1/2/1828:1833 | No text annotation | ||
IL_7SYI_075 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
IL_7SYI_107 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | ||
IL_7SYI_077 | 1/2/1713:1720, 1/2/1813:1820 | No text annotation | ||
IL_7SYI_078 | 1/2/1720:1722, 1/2/1812:1813 | Single bulged U | homologous IL_8P9A_458 IL_89505.4 | |
IL_7SYI_079 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
IL_7SYI_080 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | geometric IL_3D0U_002 IL_09705.15 | |
IL_7SYI_081 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
IL_7SYI_082 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | geometric IL_7RQB_075 NA | |
IL_7SYI_083 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation | ||
IL_7SYI_084 | 1/2/1751:1753, 1/2/1780:1782 | No text annotation | ||
IL_7SYI_085 | 1/2/1753:1754, 1/2/1778:1780 | No text annotation | ||
IL_7SYI_086 | 1/z/135:138, 1/z/286:289 | No text annotation | ||
IL_7SYI_087 | 1/z/149:150, 1/z/242:244 | No text annotation | ||
IL_7SYI_088 | 1/z/255:261, 1/z/272:277 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7SYI_089 | Isolated non-canonical cWW pair | ||
IL_7SYI_011 | No text annotation | ||
IL_7SYI_016 | No text annotation | ||
IL_7SYI_023 | Tandem non-canonical cWW pairs | ||
IL_7SYI_031 | No text annotation | ||
IL_7SYI_037 | No text annotation | ||
IL_7SYI_090 | No text annotation | ||
IL_7SYI_043 | Tandem non-canonical cWW pairs | ||
IL_7SYI_045 | Tandem non-canonical cWW pairs | ||
IL_7SYI_050 | Kink-turn | ||
IL_7SYI_055 | Minor groove platform with extra cWW | ||
IL_7SYI_057 | No text annotation | ||
IL_7SYI_062 | No text annotation | ||
IL_7SYI_076 | No text annotation | ||
IL_7SYI_102 | Triple sheared |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7SYI_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
J3_7SYI_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
J3_7SYI_014 | 1/2/682:684, 1/2/918:923, 1/2/1019:1023 | No text annotation | ||
J3_7SYI_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_8C3A_035 NA | |
J3_7SYI_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
J3_7SYI_005 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
J3_7SYI_015 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_25303.4 | |
J3_7SYI_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
J3_7SYI_008 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | geometric J3_8C3A_040 NA | |
J3_7SYI_009 | 1/2/1273:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
J3_7SYI_010 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1487 | No text annotation | ||
J3_7SYI_011 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
J3_7SYI_012 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
J3_7SYI_013 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
J4_7SYI_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
J4_7SYI_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
J4_7SYI_006 | 1/z/133:137, 1/z/287:291, 1/z/302:303, 1/z/314:315 | No text annotation | ||
J4_7SYI_004 | 1/z/139:141, 1/z/252:253, 1/z/279:280, 1/z/283:285 | No text annotation | ||
J4_7SYI_005 | 1/z/153:156, 1/z/171:172, 1/z/227:229, 1/z/238:239 | No text annotation | ||
J5_7SYI_001 | 1/2/30:34, 1/2/521:528, 1/2/557:563, 1/2/592:595, 1/2/641:644 | No text annotation | ||
J5_7SYI_002 | 1/2/30:34, 1/2/521:528, 1/2/557:565, 1/2/585:595, 1/2/641:644 | No text annotation | ||
J5_7SYI_003 | 1/2/53:62, 1/2/86:96, 1/2/434:436, 1/2/457:461, 1/2/468:474 | No text annotation | ||
J5_7SYI_004 | 1/2/123:129, 1/2/183:185, 1/2/214:219, 1/2/302:312, 1/2/337:341 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7SYI_006 | No text annotation | ||
J3_7SYI_016 | No text annotation | ||
J3_7SYI_017 | No text annotation | ||
J4_7SYI_003 | No text annotation |
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