HL_7SYI_014

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

7SYI|1|2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_014 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1449

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SYI|1|2|C|618
7SYI|1|2|A|619
7SYI|1|2|G|620
7SYI|1|2|C|621
7SYI|1|2|C|622
7SYI|1|2|G|623

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12