HL_7SYI_015

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGCGGCCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|692
7SYI|1|2|A|693
7SYI|1|2|G|694
7SYI|1|2|C|695
7SYI|1|2|G|696
7SYI|1|2|G|697
7SYI|1|2|C|729
7SYI|1|2|C|730
7SYI|1|2|G|731
7SYI|1|2|U|732
7SYI|1|2|C|733
7SYI|1|2|C|734

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain X

uS8