HL_7SYI_018

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

7SYI|1|2|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|884
7SYI|1|2|U|885
7SYI|1|2|A|886
7SYI|1|2|U|887
7SYI|1|2|U|888
7SYI|1|2|U|889
7SYI|1|2|U|890
7SYI|1|2|G|891
7SYI|1|2|U|892
7SYI|1|2|U|893
7SYI|1|2|G|894
7SYI|1|2|G|895
7SYI|1|2|U|896
7SYI|1|2|U|897
7SYI|1|2|U|898
7SYI|1|2|U|899
7SYI|1|2|C|900
7SYI|1|2|G|901
7SYI|1|2|G|902

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain M

uS17