HL_7SYI_022

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

7SYI|1|2|U|1114, 7SYI|1|2|U|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|A|1113
7SYI|1|2|U|1114
7SYI|1|2|U|1115
7SYI|1|2|C|1116
7SYI|1|2|C|1117
7SYI|1|2|C|1118
7SYI|1|2|A|1119
7SYI|1|2|U|1120

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain c

eS27

Chain z

Internal ribosome entry site; IRES