HL_7SYI_025

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7SYI|1|2|U|1248, 7SYI|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_025 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1308

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7SYI|1|2|G|1245
7SYI|1|2|A|1246
7SYI|1|2|C|1247
7SYI|1|2|U|1248
7SYI|1|2|C|1249
7SYI|1|2|A|1250
7SYI|1|2|A|1251
7SYI|1|2|C|1252
7SYI|1|2|A|1253
7SYI|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain e

eS29