HL_7SYI_033
3D structure
- PDB id
- 7SYI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 7SYI|1|2|A|1663, 7SYI|1|2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYI_033 not in the Motif Atlas
- Geometric match to HL_4V88_220
- Geometric discrepancy: 0.3869
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7SYI|1|2|G|1658
7SYI|1|2|U|1659
7SYI|1|2|C|1660
7SYI|1|2|A|1661
7SYI|1|2|U|1662
7SYI|1|2|A|1663
7SYI|1|2|A|1664
7SYI|1|2|G|1665
7SYI|1|2|C|1666
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- uS9
- Chain U
- eS19
- Chain V
- uS10
- Chain e
- eS29
Coloring options: