HL_7SYI_039

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGUUGGGUCGC

Length

12 nucleotides

Bulged bases

7SYI|1|z|U|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|z|G|261
7SYI|1|z|U|262
7SYI|1|z|G|263
7SYI|1|z|U|264
7SYI|1|z|U|265
7SYI|1|z|G|266
7SYI|1|z|G|267
7SYI|1|z|G|268
7SYI|1|z|U|269
7SYI|1|z|C|270
7SYI|1|z|G|271
7SYI|1|z|C|272

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain c

eS27