HL_7SYI_043

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

7SYI|1|2|U|960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|956
7SYI|1|2|A|957
7SYI|1|2|G|958
7SYI|1|2|G|959
7SYI|1|2|U|960
7SYI|1|2|G|961
7SYI|1|2|A|962
7SYI|1|2|A|963
7SYI|1|2|A|964
7SYI|1|2|U|965
7SYI|1|2|U|966
7SYI|1|2|C|967

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain P

uS11