HL_7SYJ_018

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7SYJ|1|2|U|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|U|885
7SYJ|1|2|A|886
7SYJ|1|2|U|887
7SYJ|1|2|U|888
7SYJ|1|2|U|889
7SYJ|1|2|U|890
7SYJ|1|2|G|891
7SYJ|1|2|U|892
7SYJ|1|2|U|893
7SYJ|1|2|G|894
7SYJ|1|2|G|895
7SYJ|1|2|U|896
7SYJ|1|2|U|897
7SYJ|1|2|U|898
7SYJ|1|2|U|899
7SYJ|1|2|C|900
7SYJ|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6