RNA 3D Hub //

7SYJ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYJ_0011/2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7SYJ_0021/2/69:80No text annotation
geometric
HL_361D_002
NA
HL_7SYJ_0051/2/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7SYJ_0071/2/377:387tRNA D-loop
geometric
HL_6UFM_001
HL_04642.3
HL_7SYJ_0471/2/416:421GNRA variation
homologous
HL_8CRE_199
HL_34789.4
HL_7SYJ_0091/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7SYJ_0111/2/498:504No text annotation
geometric
HL_7A0S_011
HL_75660.7
HL_7SYJ_0421/2/563:592No text annotation
HL_7SYJ_0141/2/618:623GNRA variation
geometric
HL_4V88_200
NA
HL_7SYJ_0431/2/819:829No text annotation
HL_7SYJ_0161/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7SYJ_0201/2/994:999GNRA
geometric
HL_1G1X_005
NA
HL_7SYJ_0221/2/1113:1120No text annotation
HL_7SYJ_0231/2/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7SYJ_0241/2/1178:1183No text annotation
geometric
HL_4WF9_011
HL_75660.7
HL_7SYJ_0481/2/1352:1359tRNA anticodon loop
geometric
HL_3RG5_006
HL_87268.2
HL_7SYJ_0281/2/1366:1373No text annotation
geometric
HL_4V88_215
NA
HL_7SYJ_0301/2/1460:1466GNRA
geometric
HL_5J7L_026
NA
HL_7SYJ_0311/2/1565:1570GNRA
geometric
HL_7A0S_068
HL_34789.4
HL_7SYJ_0321/2/1614:1625No text annotation
homologous
HL_8C3A_224
NA
HL_7SYJ_0331/2/1658:1666No text annotation
homologous
HL_8C3A_225
NA

Problematic loops

#loop idProblemSequence
HL_7SYJ_003No text annotation
HL_7SYJ_004No text annotation
HL_7SYJ_006Mini UNCG
HL_7SYJ_008No text annotation
HL_7SYJ_010UNCG
HL_7SYJ_012No text annotation
HL_7SYJ_013No text annotation
HL_7SYJ_015No text annotation
HL_7SYJ_017No text annotation
HL_7SYJ_018No text annotation
HL_7SYJ_044No text annotation
HL_7SYJ_019No text annotation
HL_7SYJ_021No text annotation
HL_7SYJ_025No text annotation
HL_7SYJ_026No text annotation
HL_7SYJ_045No text annotation
HL_7SYJ_027No text annotation
HL_7SYJ_029No text annotation
HL_7SYJ_034No text annotation
HL_7SYJ_035No text annotation
HL_7SYJ_036No text annotation
HL_7SYJ_037No text annotation
HL_7SYJ_038No text annotation
HL_7SYJ_039No text annotation
HL_7SYJ_046No text annotation
HL_7SYJ_040No text annotation
HL_7SYJ_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYJ_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7SYJ_0021/2/34:36,
1/2/519:521		Isolated cWH basepair
geometric
IL_4KQ0_003
IL_10892.2
IL_7SYJ_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_7SYJ_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7SYJ_0051/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7SYJ_0061/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7SYJ_0071/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.3
IL_7SYJ_0891/2/108:115,
1/2/348:353		No text annotation
IL_7SYJ_0081/2/110:115,
1/2/348:351		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_7SYJ_0091/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7SYJ_0101/2/123:125,
1/2/338:341		No text annotation
IL_7SYJ_0161/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7SYJ_0171/2/315:319,
1/2/332:335		No text annotation
IL_7SYJ_0181/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
NA
IL_7SYJ_0191/2/366:371,
1/2/393:394		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_7SYJ_0901/2/366:372,
1/2/392:394		No text annotation
IL_7SYJ_0201/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7SYJ_0221/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_3D2V_001
IL_97561.3
IL_7SYJ_0231/2/491:495,
1/2/508:509		C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_7SYJ_0241/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7SYJ_0271/2/563:569,
1/2/581:592		No text annotation
IL_7SYJ_1051/2/599:608,
1/2/635:637		No text annotation
IL_7SYJ_0291/2/611:617,
1/2/624:632		Kink-turn related
geometric
IL_4V88_415
NA
IL_7SYJ_0301/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.3
IL_7SYJ_0311/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_6CZR_134
NA
IL_7SYJ_0321/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
NA
IL_7SYJ_0331/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7SYJ_0371/2/802:805,
1/2/858:863		No text annotation
IL_7SYJ_0381/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.3
IL_7SYJ_0391/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7SYJ_0421/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_74641.2
IL_7SYJ_0931/2/925:926,
1/2/1015:1017		Single bulged U
geometric
IL_2PJP_001
IL_97561.3
IL_7SYJ_0441/2/927:929,
1/2/1013:1014		Single stack bend
geometric
IL_5J7L_269
NA
IL_7SYJ_0941/2/927:935,
1/2/1007:1014		No text annotation
IL_7SYJ_0451/2/929:931,
1/2/1010:1013		No text annotation
geometric
IL_4P3T_002
NA
IL_7SYJ_0461/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7SYJ_0491/2/1041:1047,
1/2/1071:1074		No text annotation
IL_7SYJ_0501/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_6CZR_145
NA
IL_7SYJ_0511/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7SYJ_0521/2/1098:1103,
1/2/1129:1134		No text annotation
geometric
IL_5TBW_476
NA
IL_7SYJ_0541/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_84044.1
IL_7SYJ_0551/2/1202:1208,
1/2/1691:1697		No text annotation
IL_7SYJ_0621/2/1337:1338,
1/2/1488:1490		Single bulged A
geometric
IL_4WF9_006
IL_14190.2
IL_7SYJ_0981/2/1337:1340,
1/2/1487:1490		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_7SYJ_0631/2/1338:1340,
1/2/1487:1488		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_7SYJ_0641/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
geometric
IL_6RA4_002
IL_10892.2
IL_7SYJ_0651/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_6DLR_003
IL_34520.3
IL_7SYJ_0701/2/1550:1558,
1/2/1577:1582		180 degree turn
geometric
IL_4LFB_052
IL_08849.1
IL_7SYJ_0791/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_4V88_471
NA

Problematic loops

#loop idProblemSequence
IL_7SYJ_088Tandem non-canonical cWW pairs
IL_7SYJ_011No text annotation
IL_7SYJ_012tWH-tWH-tHW-tHW
IL_7SYJ_013No text annotation
IL_7SYJ_014Double sheared with near cWW
IL_7SYJ_015No text annotation
IL_7SYJ_021No text annotation
IL_7SYJ_104Single bulged A
IL_7SYJ_025Isolated non-canonical cWW pair
IL_7SYJ_091No text annotation
IL_7SYJ_026No text annotation
IL_7SYJ_028No text annotation
IL_7SYJ_034No text annotation
IL_7SYJ_035No text annotation
IL_7SYJ_036No text annotation
IL_7SYJ_106No text annotation
IL_7SYJ_040Isolated non-canonical cWW pair
IL_7SYJ_041Tandem non-canonical cWW pairs
IL_7SYJ_092Isolated non-canonical cWW pair
IL_7SYJ_043Tandem non-canonical cWW pairs
IL_7SYJ_047Tandem non-canonical cWW pairs
IL_7SYJ_048Kink-turn
IL_7SYJ_107No text annotation
IL_7SYJ_095No text annotation
IL_7SYJ_053No text annotation
IL_7SYJ_056C-loop
IL_7SYJ_057Isolated non-canonical cWW pair
IL_7SYJ_058Minor groove platform
IL_7SYJ_059No text annotation
IL_7SYJ_096No text annotation
IL_7SYJ_097No text annotation
IL_7SYJ_060Single bulged U
IL_7SYJ_061No text annotation
IL_7SYJ_066No text annotation
IL_7SYJ_099No text annotation
IL_7SYJ_067No text annotation
IL_7SYJ_068Single bulged G
IL_7SYJ_069Isolated non-canonical cWW pair
IL_7SYJ_100No text annotation
IL_7SYJ_071Tandem non-canonical cWW pairs
IL_7SYJ_072No text annotation
IL_7SYJ_073No text annotation
IL_7SYJ_074No text annotation
IL_7SYJ_075No text annotation
IL_7SYJ_101No text annotation
IL_7SYJ_076Double sheared
IL_7SYJ_102Single bulged U
IL_7SYJ_077Isolated non-canonical cWW pair
IL_7SYJ_078Isolated non-canonical cWW pair
IL_7SYJ_080Isolated non-canonical cWW pair
IL_7SYJ_081Triple sheared
IL_7SYJ_082No text annotation
IL_7SYJ_083No text annotation
IL_7SYJ_084No text annotation
IL_7SYJ_103No text annotation
IL_7SYJ_085No text annotation
IL_7SYJ_086No text annotation
IL_7SYJ_087No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYJ_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_068
J3_58657.1
J3_7SYJ_0021/2/682:684,
1/2/918:922,
1/2/1022:1023		No text annotation
geometric
J3_4V88_080
NA
J3_7SYJ_0141/2/682:684,
1/2/918:923,
1/2/1019:1023		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_7SYJ_0031/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_8P9A_073
J3_97642.2
J3_7SYJ_0041/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7SYJ_0151/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7SYJ_0101/2/1340:1347,
1/2/1382:1389,
1/2/1481:1487		No text annotation
J3_7SYJ_0111/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_7SYJ_0171/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J4_7SYJ_0061/2/30:34,
1/2/521:528,
1/2/557:596,
1/2/640:644		No text annotation
J4_7SYJ_0011/2/30:34,
1/2/521:528,
1/2/557:598,
1/2/638:644		No text annotation
J4_7SYJ_0021/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_7SYJ_0031/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_7SYJ_0041/2/30:34,
1/2/521:528,
1/2/557:563,
1/2/592:596,
1/2/640:644		No text annotation
J5_7SYJ_0021/2/53:62,
1/2/86:97,
1/2/433:437,
1/2/457:461,
1/2/468:474		No text annotation
J5_7SYJ_0051/2/123:129,
1/2/183:185,
1/2/214:219,
1/2/302:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_7SYJ_005No text annotation
J3_7SYJ_016No text annotation
J3_7SYJ_006No text annotation
J3_7SYJ_007No text annotation
J3_7SYJ_018No text annotation
J3_7SYJ_008No text annotation
J3_7SYJ_009No text annotation
J3_7SYJ_012No text annotation
J3_7SYJ_013No text annotation
J4_7SYJ_004No text annotation
J4_7SYJ_005No text annotation
J5_7SYJ_001No text annotation
J5_7SYJ_003No text annotation

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