HL_7SYJ_030

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYJ_030 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.3081

The information below is about HL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90617.4

Basepair signature

cWW-tSH

Number of instances in this motif group

9

Unit IDs

7SYJ|1|2|C|1460
7SYJ|1|2|G|1461
7SYJ|1|2|U|1462
7SYJ|1|2|U|1463
7SYJ|1|2|C|1464
7SYJ|1|2|A|1465
7SYJ|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1