HL_7SYJ_046

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

7SYJ|1|z|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|z|U|262
7SYJ|1|z|G|263
7SYJ|1|z|U|264
7SYJ|1|z|U|265
7SYJ|1|z|G|266
7SYJ|1|z|G|267
7SYJ|1|z|G|268
7SYJ|1|z|U|269
7SYJ|1|z|C|270
7SYJ|1|z|G|271

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain c

eS27