HL_7SYJ_047

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYJ_047 not in the Motif Atlas

Homologous match to HL_8CRE_199

Geometric discrepancy: 0.2309

The information below is about HL_8CRE_199

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7SYJ|1|2|U|416
7SYJ|1|2|C|417
7SYJ|1|2|A|418
7SYJ|1|2|G|419
7SYJ|1|2|G|420
7SYJ|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain K

uS4

Chain M

uS17

Chain X

uS8