HL_7SYK_009

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7SYK|1|2|A|448, 7SYK|1|2|C|450, 7SYK|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYK_009 not in the Motif Atlas

Geometric match to HL_4V88_195

Geometric discrepancy: 0.1551

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYK|1|2|C|441
7SYK|1|2|C|442
7SYK|1|2|U|443
7SYK|1|2|G|444
7SYK|1|2|A|445
7SYK|1|2|G|446
7SYK|1|2|A|447
7SYK|1|2|A|448
7SYK|1|2|A|449
7SYK|1|2|C|450
7SYK|1|2|G|451
7SYK|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8