HL_7SYK_019

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYK_019 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.2937

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYK|1|2|A|957
7SYK|1|2|G|958
7SYK|1|2|G|959
7SYK|1|2|U|960
7SYK|1|2|G|961
7SYK|1|2|A|962
7SYK|1|2|A|963
7SYK|1|2|A|964
7SYK|1|2|U|965
7SYK|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain P

uS11