3D structure

PDB id
7SYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYK_024 not in the Motif Atlas
Geometric match to HL_5J7L_180
Geometric discrepancy: 0.3059
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7SYK|1|2|U|1178
7SYK|1|2|G|1179
7SYK|1|2|C|1180
7SYK|1|2|A|1181
7SYK|1|2|A|1182
7SYK|1|2|A|1183

Current chains

Chain 2
18S rRNA

Nearby chains

Chain n
60s ribosomal protein l41

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0412 s