HL_7SYK_024
3D structure
- PDB id
- 7SYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGCAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYK_024 not in the Motif Atlas
- Geometric match to HL_5J7L_180
- Geometric discrepancy: 0.3059
- The information below is about HL_5J7L_180
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
7SYK|1|2|U|1178
7SYK|1|2|G|1179
7SYK|1|2|C|1180
7SYK|1|2|A|1181
7SYK|1|2|A|1182
7SYK|1|2|A|1183
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain n
- 60s ribosomal protein l41
Coloring options: