HL_7SYK_032

3D structure

PDB id

7SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7SYK|1|2|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYK_032 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.3018

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYK|1|2|A|1614
7SYK|1|2|U|1615
7SYK|1|2|U|1616
7SYK|1|2|G|1617
7SYK|1|2|C|1618
7SYK|1|2|A|1619
7SYK|1|2|A|1620
7SYK|1|2|U|1621
7SYK|1|2|U|1622
7SYK|1|2|A|1623
7SYK|1|2|U|1624
7SYK|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain e

eS29