HL_7SYL_007

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYL|1|2|C|381, 7SYL|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYL_007 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3573

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

7SYL|1|2|G|377
7SYL|1|2|U|378
7SYL|1|2|C|379
7SYL|1|2|G|380
7SYL|1|2|C|381
7SYL|1|2|C|382
7SYL|1|2|G|383
7SYL|1|2|U|384
7SYL|1|2|G|385
7SYL|1|2|C|386
7SYL|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17