HL_7SYL_008
3D structure
- PDB id
- 7SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AUCAGGGU
- Length
- 8 nucleotides
- Bulged bases
- 7SYL|1|2|C|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SYL_008 not in the Motif Atlas
- Geometric match to HL_7RQB_057
- Geometric discrepancy: 0.3785
- The information below is about HL_7RQB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53619.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7SYL|1|2|A|415
7SYL|1|2|U|416
7SYL|1|2|C|417
7SYL|1|2|A|418
7SYL|1|2|G|419
7SYL|1|2|G|420
7SYL|1|2|G|421
7SYL|1|2|U|422
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5 (S2)
- Chain K
- uS4
- Chain M
- uS17
- Chain X
- uS8
- Chain Y
- uS12
Coloring options: