HL_7SYL_019

3D structure

PDB id

7SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYL_019 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.371

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYL|1|2|A|957
7SYL|1|2|G|958
7SYL|1|2|G|959
7SYL|1|2|U|960
7SYL|1|2|G|961
7SYL|1|2|A|962
7SYL|1|2|A|963
7SYL|1|2|A|964
7SYL|1|2|U|965
7SYL|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26 (S26)