3D structure

PDB id
7SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.5 Å

Loop

Sequence
AUUGCAAUUAUU
Length
12 nucleotides
Bulged bases
7SYL|1|2|U|1621, 7SYL|1|2|U|1622, 7SYL|1|2|A|1623
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SYL_032 not in the Motif Atlas
Geometric match to HL_4V88_219
Geometric discrepancy: 0.3678
The information below is about HL_4V88_219
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03273.1
Basepair signature
cWW-F-F-tWH-F-F-F
Number of instances in this motif group
3

Unit IDs

7SYL|1|2|A|1614
7SYL|1|2|U|1615
7SYL|1|2|U|1616
7SYL|1|2|G|1617
7SYL|1|2|C|1618
7SYL|1|2|A|1619
7SYL|1|2|A|1620
7SYL|1|2|U|1621
7SYL|1|2|U|1622
7SYL|1|2|A|1623
7SYL|1|2|U|1624
7SYL|1|2|U|1625

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Q
uS19
Chain T
uS13
Chain U
eS19
Chain e
eS29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2331 s