HL_7SYM_007

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYM|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_007 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2233

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYM|1|2|G|377
7SYM|1|2|U|378
7SYM|1|2|C|379
7SYM|1|2|G|380
7SYM|1|2|C|381
7SYM|1|2|C|382
7SYM|1|2|G|383
7SYM|1|2|U|384
7SYM|1|2|G|385
7SYM|1|2|C|386
7SYM|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17