HL_7SYN_007

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7SYN|1|2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYN_007 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.1731

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYN|1|2|G|377
7SYN|1|2|U|378
7SYN|1|2|C|379
7SYN|1|2|G|380
7SYN|1|2|C|381
7SYN|1|2|C|382
7SYN|1|2|G|383
7SYN|1|2|U|384
7SYN|1|2|G|385
7SYN|1|2|C|386
7SYN|1|2|C|387

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8

Chain M

uS17