HL_7SYN_026

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYN|1|2|U|1300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYN_026 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.5908

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYN|1|2|A|1295
7SYN|1|2|U|1296
7SYN|1|2|U|1297
7SYN|1|2|G|1298
7SYN|1|2|A|1299
7SYN|1|2|U|1300
7SYN|1|2|A|1301
7SYN|1|2|G|1302
7SYN|1|2|C|1303
7SYN|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

uS14

Chain g

eS31